摘要
基因组研究的发展,使得利用生物信息学方法在一个相对狭小的基因组区段内开发新的SSR标记成为可能。要实现这一点,首先面临的任务就是潜在的SSR位点的搜索。已有的方法或多或少存在这样或那样的缺陷。文章介绍了利用Visual Basic语言开发本地化的SSR位点搜索软件的尝试。所编制的SSRHunter软件能够较出色地完成这一任务。此外,SSRHunter还提供了自动序列预处理,常规的序列整理和序列变换功能以及方便的结果输出方式。
Progress in genome research has made it possible to develop new SSR markers by bioinformatics in a relatively narrow region of genome. To realize it, the first thing is to search for potential SSR sites. Any known methods have more or less defects. Efforts were made to develop a local SSR sites searching software in this study. The resultant software, SSRHunter, could accomplish this task perfectly. Furthermore, SSRHunter could provide automatic pretreatment of sequences, routine arrangement of sequences, sequence transformation and convenient report output.
出处
《遗传》
CAS
CSCD
北大核心
2005年第5期808-810,共3页
Hereditas（Beijing)
基金
国家863计划(编号:2002AA2Z1001-06)
国家转基因植物研究与产业化开发专项(编号:JY03-A-07-02)~~
