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应用16S rRNA基因序列分析与细菌生化反应鉴定湖生代夫特菌 被引量:4

Identification of Delftia lacustris by 16S rRNA gene sequencing and biochemical reactions
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摘要 目的对某医院术后感染中分离到的4株不常见病原菌进行菌种鉴定。方法采用16SrRNA基因序列的测定、细菌形态学以及商品化的VITEK-2GN、API 20NE系统相结合的多相分类学方法。结果该4株菌均为需氧的革兰阴性非发酵菌,其氧化酶阳性,在血平板、巧克力平板、麦康凯平板等常用培养基上生长良好;采用VITEK-2GN与API 20NE系统,该4株菌均鉴定为食酸代夫特菌/食酸丛毛单胞菌,并显示为极好的鉴定度;但16SrRNA基因序列分析的结果显示,该4株菌与食酸代夫特菌的相似度仅为98.4%,而与鹤原代夫特菌、湖生代夫特菌的同源性更高,分别为99.9%和100.0%;其甘露醇同化试验与苹果酸同化试验阳性,与湖生代夫特菌一致而不同于鹤原代夫特菌。结论该术后感染的4株病原菌均为湖生代夫特菌,16SrRNA基因序列分析能提供有力的遗传学证据。 OBJECTIVE To identify 4 infrequently isolated bacteria isolated from the patients with postoperative infections. METHODS The bacterial 16S rRNA gene sequence-based identification, commerical VITEK-2 automate systems, API 20NE strips and VITEK-2 GN kits were performed to all of the 4 isolates respectively. RESULTS All 4 strains were glucose non-fermenting gram-negative bacilli with positive oxidase reaction, which were well- growing on blood agar, haemophilus chocolate agar and Maconkey agar. They would be mistakenly identified to Delftia acidovorans with a excellent confidence by API 20NE and VITEK-2 GN kits, their 16S rRNA gene sequences were only 98.4 % identity to the valid published D. acidovorans, but more closely related to D. tsuru- hatensis and D. lacustri with 99.9% and 100.0% identity. And the positive reaction of carbon utilization of mani- tol and malate were identified to D. lacustri and differentiated to D. tsuruhatensis. CONCLUSION The pathogens of the postoperative infection are identified as D. lacustri, and the comparative analysis based on 16S rRNA gene sequences is a useful method to identify such problematic and newly nomenclated bacteria.
出处 《中华医院感染学杂志》 CAS CSCD 北大核心 2013年第15期3572-3574,共3页 Chinese Journal of Nosocomiology
关键词 代夫特菌属 RNA 核糖体 16S RRNA 基因测序鉴定 Delftia RNA Ribosomal 16S rRNA Sequence-based identification
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参考文献5

  • 1屈平华,赵红波,黄彬,张伟铮,张颖,陈茶.卫生部微生物室间质评1012菌的鉴定与放线菌属的系统发生分析[J].中华检验医学杂志,2011,34(9):814-819. 被引量:35
  • 2Jorgensen NOG,Brandt KK,Nybroe O,et al.Delftia lacustrissp.nov,apeptidoglycandegrading bacterium from fresh water,and emended description of Delftia tsuruhatensis as a peptidogly-can-degrading bacterium[J].Int J Syst Evol Microbiol,2009,59(Pt9):2195-2199.
  • 3Lee SM,Kim MK,Lee JL,et al.Experience of Comamonasacidovorans keratitis with delayed onset and treatment re-sponse in immunocompromised cornea[J].Korean J Ophthal-mol,2008,22(1):49-52.
  • 4Preiswerk B,Ullrich S,Speich R,et al.Human infectionwith Delftia tsuruhatensis isolated from a central venous cath-eter[J].J Med Microbiol,2011,60(Pt2):246-248.
  • 5Adékambi T,Berger P,Raoult D,et al.rpoBgene sequence-based characterization of emerging non-tuberculous mycobac-teria with descriptions of Mycobacterium bolletii sp.nov.Mycobacterium phocaicum sp.nov.and Mycobacteriumaubagnense sp.nov[J].Int J Syst Evol Microbiol,2006,56(Pt 1):133-143.

二级参考文献22

  • 1职晓阳,蔡曼,杨玲玲,李文均,徐丽华,刘志恒,姜成林.建立放线菌门的证据[J].微生物学通报,2006,33(3):181-183. 被引量:11
  • 2默里,巴伦,法勒,等.临床微生物学手册.徐建国,梁国栋,刑来君,等,译.北京:科学出版社,2005:814-817.
  • 3Clarridge JE 3rd,Zhang Q.Genotypic diversity of clinical actinomyces species:phtenotype,source,and disease correlation among genospecies.J Clin Microbiol,2002,40:3442-3448.
  • 4Sullivan DC,Chapman SW.Bacteria that masquerade as fungi:aclinomycosis/nocardia.Proc Am Thorac Soc,2010,7:216-221.
  • 5珀西恩.分子微生物诊断原理与实践.柯昌文,邓小玲,王洪敏,等,译.广州,中山大学出版社,2008:p476.
  • 6Fanke G,Englert R,Frodl R,et al.Actinomyces hominis sp.nov.isolated form a nound wab.Int J Syst Evol Microbid,2010,60:1678-1689.
  • 7Yoon JH,Kim IG,Shint YK,et al.Proposal of the genus Thermoactinomyces sensu stricto and three new genera,Laceyella,Thermoflavimicrobium and Seinonella,on the basis of phenotypic,phylogenetic and chemotaxonomic analyses. Inter J Syst Evol Microbiol,2005,55:395-400.
  • 8Van Esbroeck M,Vandamme P,Falsen E,et al.Polyphasic approach to the classification and identification of Gardnerella vaginalis and unidentified Gardnerella vaginalis-like coryneforms prsent in bacterial vaginosis.Int J Syst Bacteriol,1996,46:675-682.
  • 9Hall V,Collins MD,Hutson R,et al.Actinomyces vaccimaxillae sp.nov.,from the jaw of a cow.Int J Syst Evol Microbiol,2003,53:603-606.
  • 10Hall V,Collins MD,Hutson R,et al.Actinomyces cardiffensis sp.nov.from human clinical sources.J Clin Microbiol,2002,40:3427 -3431.

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