为了解生物医学文本挖掘技术在基因组注释方面的基本应用,以Web of Science(WOS)数据库中收录的关于生物医学文本挖掘技术在基因组注释方面的基本应用的文献作为来源文献,利用书目共现分析软件提取文献中的高被引论文,形成来源文献——...为了解生物医学文本挖掘技术在基因组注释方面的基本应用,以Web of Science(WOS)数据库中收录的关于生物医学文本挖掘技术在基因组注释方面的基本应用的文献作为来源文献,利用书目共现分析软件提取文献中的高被引论文,形成来源文献——高被引文献词篇矩阵,利用聚类软件对高被引论文进行同被引聚类分析,最后得到生物医学文本挖掘技术在基因组注释方面的基本应用,主要包括权威工具的使用、文本挖掘工具和算法的开发、文本挖掘工具的检验。展开更多
细点石斑鱼(Epinephelus cyanopodus),隶属于鲈形目、鮨科、石斑鱼属,是一种栖息于暖水礁区的肉食性鱼类。目前国内已实现人工养殖,但在苗种生产过程中面临雄性亲本获取困难的问题,性别调控的关键基因尚不明确。本试验通过转录组测序、...细点石斑鱼(Epinephelus cyanopodus),隶属于鲈形目、鮨科、石斑鱼属,是一种栖息于暖水礁区的肉食性鱼类。目前国内已实现人工养殖,但在苗种生产过程中面临雄性亲本获取困难的问题,性别调控的关键基因尚不明确。本试验通过转录组测序、近缘物种比对及从头预测等方法,对细点石斑鱼进行了基因组注释,共获得26,743个编码基因。在此基础上,联合近缘物种开展了比较基因组学分析,揭示了细点石斑鱼与赤点石斑鱼(Epinephelus akaara)之间的基因组差异及基因家族变化情况,同时定位到与性别调控相关的褪黑素(Melatonin, MT)合成基因aanat,为今后的性别调控研究奠定了数据基础。Epinephelus cyanopodus, belonging to the order Perciformes, family Serranidae, and genus Epinephelus, is a carnivorous fish that inhabits warm-water reef areas. At present, artificial breeding has been achieved in China. However, in the process of seed production, there is a problem of difficulty in obtaining male parents, and the key genes for sex control are still unclear. In this study, strategies such as transcriptome sequencing data, genome comparison with closely related species, and de novo prediction were adopted to complete the genome annotation work, and a total of 26,743 coding genes were identified. Based on this, a comparative genomics analysis was further conducted in combination with closely related species, revealing the quantity and distribution characteristics of various variations in the genome of Epinephelus cyanopodus, as well as the changing trends of gene families during evolution. Moreover, the key gene aanat related to sex regulation and melatonin (MT) synthesis was successfully located, establishes the data foundation for future studies on gender regulation.展开更多
文摘为了解生物医学文本挖掘技术在基因组注释方面的基本应用,以Web of Science(WOS)数据库中收录的关于生物医学文本挖掘技术在基因组注释方面的基本应用的文献作为来源文献,利用书目共现分析软件提取文献中的高被引论文,形成来源文献——高被引文献词篇矩阵,利用聚类软件对高被引论文进行同被引聚类分析,最后得到生物医学文本挖掘技术在基因组注释方面的基本应用,主要包括权威工具的使用、文本挖掘工具和算法的开发、文本挖掘工具的检验。
文摘细点石斑鱼(Epinephelus cyanopodus),隶属于鲈形目、鮨科、石斑鱼属,是一种栖息于暖水礁区的肉食性鱼类。目前国内已实现人工养殖,但在苗种生产过程中面临雄性亲本获取困难的问题,性别调控的关键基因尚不明确。本试验通过转录组测序、近缘物种比对及从头预测等方法,对细点石斑鱼进行了基因组注释,共获得26,743个编码基因。在此基础上,联合近缘物种开展了比较基因组学分析,揭示了细点石斑鱼与赤点石斑鱼(Epinephelus akaara)之间的基因组差异及基因家族变化情况,同时定位到与性别调控相关的褪黑素(Melatonin, MT)合成基因aanat,为今后的性别调控研究奠定了数据基础。Epinephelus cyanopodus, belonging to the order Perciformes, family Serranidae, and genus Epinephelus, is a carnivorous fish that inhabits warm-water reef areas. At present, artificial breeding has been achieved in China. However, in the process of seed production, there is a problem of difficulty in obtaining male parents, and the key genes for sex control are still unclear. In this study, strategies such as transcriptome sequencing data, genome comparison with closely related species, and de novo prediction were adopted to complete the genome annotation work, and a total of 26,743 coding genes were identified. Based on this, a comparative genomics analysis was further conducted in combination with closely related species, revealing the quantity and distribution characteristics of various variations in the genome of Epinephelus cyanopodus, as well as the changing trends of gene families during evolution. Moreover, the key gene aanat related to sex regulation and melatonin (MT) synthesis was successfully located, establishes the data foundation for future studies on gender regulation.
