Psoriasis is a chronic inflammatory skin disease that affects 0.1% - 5% depending on the population. PSORS1 is the major susceptibility locus, accounting for approximately 33% - 50% of the genetic component of psorias...Psoriasis is a chronic inflammatory skin disease that affects 0.1% - 5% depending on the population. PSORS1 is the major susceptibility locus, accounting for approximately 33% - 50% of the genetic component of psoriasis among Caucasians. PSORS1 is located within the major histocompatability complex (MHC) locus on 6p21.3. Its position has been refined to hundreds of kilobase and the region located at ～ 100- 200 kb telomeric to human leukocyte antigen (HLA)- C is a very strong candidate. To determine the MHC psoriasis risk haplotype, we screened the whole 46 kb interval for single- nucleotide polymorphisms (SNP) and identified 138 SNP. We genotyped 29 SNP throughout this region in psoriatic nuclear families. We calculated the frequency of haplotypesgenerated bythe 29 SNP using all genotyped founder individuals and found four common haplotype with frequency >0.10. We then used SNP- tagger to derive the best six SNP and fed these into Transmit using 148 nuclear families. We found that CTGGAC haplotype is a single- point score haplotypes telomeric to HLA- C and gives a 1 df, χ 2 of 50.27 (P < 0.0001). Most importantly the six selected SNP accurately tagged the most common haplotype found in this region. Moreover, using the same program (Transmit) we show that the association with CTGGAC is higher than the one with HLA- Cw6 (χ 2=10.53; P=0.0051). Our results give scores as high as the highest single- point scores suggesting that it is unlikely to be able to discriminate the origin of the association on this analysis on strength of association.展开更多
文摘Psoriasis is a chronic inflammatory skin disease that affects 0.1% - 5% depending on the population. PSORS1 is the major susceptibility locus, accounting for approximately 33% - 50% of the genetic component of psoriasis among Caucasians. PSORS1 is located within the major histocompatability complex (MHC) locus on 6p21.3. Its position has been refined to hundreds of kilobase and the region located at ～ 100- 200 kb telomeric to human leukocyte antigen (HLA)- C is a very strong candidate. To determine the MHC psoriasis risk haplotype, we screened the whole 46 kb interval for single- nucleotide polymorphisms (SNP) and identified 138 SNP. We genotyped 29 SNP throughout this region in psoriatic nuclear families. We calculated the frequency of haplotypesgenerated bythe 29 SNP using all genotyped founder individuals and found four common haplotype with frequency >0.10. We then used SNP- tagger to derive the best six SNP and fed these into Transmit using 148 nuclear families. We found that CTGGAC haplotype is a single- point score haplotypes telomeric to HLA- C and gives a 1 df, χ 2 of 50.27 (P < 0.0001). Most importantly the six selected SNP accurately tagged the most common haplotype found in this region. Moreover, using the same program (Transmit) we show that the association with CTGGAC is higher than the one with HLA- Cw6 (χ 2=10.53; P=0.0051). Our results give scores as high as the highest single- point scores suggesting that it is unlikely to be able to discriminate the origin of the association on this analysis on strength of association.
